PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g020620.2
Common NameMTR_2g020620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SBP
Protein Properties Length: 642aa    MW: 72315.9 Da    PI: 6.1642
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g020620.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP53.18.5e-1725614177
                     EE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                      fC +C rfh ls+fDe+krsCrr+L++hn rrr+k+
  Medtr2g020620.2 25 GFCWRCCRFHVLSDFDEGKRSCRRKLERHNTRRRRKA 61
                     6*********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.144160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.29E-142164IPR004333Transcription factor, SBP-box
PfamPF031104.2E-102260IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.4E-62647IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MLIVMIFAIE VDYCEFYDDD DVDWGFCWRC CRFHVLSDFD EGKRSCRRKL ERHNTRRRRK  60
AVDSAVGVDN EVQTVTQNDD SNCDGELGID YSNLSRENIE KRALQDHEEE PVVNGSSTPE  120
TQNINGDSVV SFVASAETQA NIGKDVSDPS KSPSYCDNKS DYSSMCQTGR VSFKLYDWNP  180
AEFPRRLRLQ IFQWLASMPV ELEGYIRPGC TILTIFIAMP NIMWINLLKD PMYYVRDLAA  240
PRNMLSGRGT ALIHLNDMIF RVMKDGISVT KVEVNMQAPR LHYIHPTCFE AGKPMEFFAC  300
GSNLLQPKFR LLVSFYGKYL KCEYCAPSPH NSAEDNISCA FDNQLYKICV PHIEENLLGP  360
AFIEVENESG LSNFIPVLIG DKEICTELKI LQQKLDASLL SKQFRSASGS SICSSCEAFV  420
HIHTSSSDLL VDIAWLLKDP TSENFDRMVS ASQIQRYCYL LDFLICNDST IILGKILPNL  480
ISITKSMKSN ISDVDMDQLL KGMCNARDAI CRKGGGIVLN SKMEGFKPAQ CSSQNAKLSV  540
VEVNSQGIQF RADAELGVLS SLASDEKNQK IPLLKRDIIM NMEELPKRCD HQNLTRGFLR  600
SRPTTFVLVS LVVCLAVCVS VFHHGRVNEL AVSIRRCLFN H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14658RRKLERHNTRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.83810.0leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519140.0AC151914.19 Medicago truncatula clone mth2-29f16, complete sequence.
GenBankAC1643950.0AC164395.7 Medicago truncatula clone mth2-69h11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462680.10.0squamosa promoter-binding-like protein
TrEMBLA0A072VEX50.0A0A072VEX5_MEDTR; Squamosa promoter-binding-like protein
STRINGGLYMA13G28460.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.11e-163squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]